PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000211677
Common NameMYB17
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 196aa    MW: 21920.7 Da    PI: 9.6071
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000211677genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.96.4e-151360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+++Ede+l + v++ G g+W++ +   g+ R++k+c++rw +yl
    MDP0000211677 13 KGAWSKQEDEKLTEFVEKNGEGSWRSLPLAAGLLRCGKSCRLRWVNYL 60
                     79******************************99************97 PP

2Myb_DNA-binding54.33.1e-1766111148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
    MDP0000211677  66 RGNFGEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 111
                      89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-20462IPR009057Homeodomain-like
PROSITE profilePS5129414.31860IPR017930Myb domain
SMARTSM007171.9E-111262IPR001005SANT/Myb domain
SuperFamilySSF466894.12E-2812107IPR009057Homeodomain-like
PfamPF002496.6E-141360IPR001005SANT/Myb domain
CDDcd001676.79E-91560No hitNo description
PROSITE profilePS5129426.40261115IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-2663116IPR009057Homeodomain-like
SMARTSM007171.9E-1665113IPR001005SANT/Myb domain
PfamPF002496.6E-1666111IPR001005SANT/Myb domain
CDDcd001676.78E-1268111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MRKPCCEKKK TNKGAWSKQE DEKLTEFVEK NGEGSWRSLP LAAGLLRCGK SCRLRWVNYL  60
RPNLKRGNFG EDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNTH LRRKLIQMGV  120
DPNNHRIGHT QNIGLSKSSF GSRKANHPCK AANSQGDNDS DDHQKPFTDS ASGPESNTSC  180
SGLPDLNLDL TIGLPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27131157108B-MYB
1h8a_C3e-271211526128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.170790.0leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4345471e-35AB434547.1 Fagus crenata FcMYBS2 mRNA for transcription factor MYBS2, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280904.11e-144myb-related protein 308-like
SwissprotP813939e-74MYB08_ANTMA; Myb-related protein 308
SwissprotQ9SZP12e-73MYB4_ARATH; Transcription repressor MYB4
TrEMBLD9ZJ541e-144D9ZJ54_MALDO; MYB domain class transcription factor
STRINGVIT_01s0011g04760.t014e-86(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-74myb domain protein 4